Tools

Enrichment Testing

run_one_enrichment_test(adata, df, ...[, ...])	Compute cytokine enrichment activity in one cell type using GSEA scoring.
run_all_enrichment_test(adata, df, ...[, ...])	Compute cytokine enrichment across multiple threshold values for robustness.

Robustness Analysis

check_robustness(all_results[, ...])	Filter for robust and significant results out of original enrichments.
get_robust_significant_results(results[, ...])	Filter for robust and significant results from original enrichments.

Cytokine Communication

get_one_senders_and_receivers(adata, ...[, ...])	Compute cytokine sender and receiver statistics for one cytokine.
get_all_senders_and_receivers(adata, ...[, ...])	Compute cytokine sender and receiver statistics for a list of cytokines.

Utilities

create_celltype_combos([adata_celltypes, ...])

Reformat cell-type names for run_one_enrichment_test().